Welcome to the Fungal Genomics and Bioinformatics Workshop!
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Here we will post information needed for the workshop:
- software packages we use
- how to use the packages

We will use a lot of Linux command line, for reminders have a look at the Help page for technical stuff.

References to the papers about the software and other helpful papers you can find in the References chapter.

.. note::

   This project is under active development.


Contents
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.. toctree::

   0.1taxonomy
   0.2basecalling
   1dataQC
   2trimming
   3assembly
   4assemblyQC
   5.0polishing
   5.1heterozygosity
   6annotation
   7comparative
   8phylogenomics
   Tech help
   References